ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics

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Authors:	Thierry Matthey	University of Bergen, Bergen, Norway
	Trevor Cickovski	University of Notre Dame, Notre Dame, IN
	Scott Hampton	University of Notre Dame, Notre Dame, IN
	Alice Ko	University of Notre Dame, Notre Dame, IN
	Qun Ma	University of Notre Dame, Notre Dame, IN
	Matthew Nyerges	University of Notre Dame, Notre Dame, IN
	Troy Raeder	University of Notre Dame, Notre Dame, IN
	Thomas Slabach	University of Notre Dame, Notre Dame, IN
	Jesús A. Izaguirre	University of Notre Dame, Notre Dame, IN

	2004 Article
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ACM Transactions on Mathematical Software (TOMS) TOMS Homepage archive

Volume 30 Issue 3, September 2004
Pages 237-265
ACM New York, NY, USA
table of contents doi>10.1145/1024074.1024075

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Tags: algorithm design and analysis algorithms design domain-specific architectures efficiency fast electrostatic methods incremental parallelism molecular dynamics multigrid multiple time-stepping integration multistep and multivalue methods object-oriented framework. parallel and vector implementations performance reusable libraries user interfaces

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