ACM Transactions on Parallel Computing (TOPC) - Special Issue on PPOPP 2014: Volume 2 Issue 4, March 2016
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Biological sequence alignment is a very popular application in Bioinformatics, used routinely worldwide. Many implementations of biological sequence alignment algorithms have been proposed for multicores, GPUs, FPGAs and CellBEs. These implementations are platform-specific; porting them to other systems requires considerable programming effort. This article proposes and evaluates MASA, a flexible ...
Biological sequence alignment, GPU, Intel Phi, multicores, parallel algorithms