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ICBBB '19: Proceedings of the 2019 9th International Conference on Bioscience, Biochemistry and Bioinformatics
ACM2019 Proceeding
Publisher:
  • Association for Computing Machinery
  • New York
  • NY
  • United States
Conference:
ICBBB '19: 2019 9th International Conference on Bioscience, Biochemistry and Bioinformatics Singapore Singapore January 7 - 9, 2019
ISBN:
978-1-4503-6654-0
Published:
07 January 2019
In-Cooperation:
Natl University of Singapore

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Abstract

The scientific platform was provided by ICBBB 2019 for both local and international scientists, engineers and technologists who work in all aspects of bioscience, biochemistry and bioinformatics. ICBBB 2019 conference proceedings contains 5 sessions, such as Biomedical Imaging and Image Processing, Bioinformatics and Biosignal Analysis, Biological Systems Modeling and Simulation, Bioscience and Biotechnology and Statistical Ecology.

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SESSION: Biomedical Imaging and Image Processing
research-article
An Unsupervised Learning with Feature Approach for Brain Tumor Segmentation Using Magnetic Resonance Imaging

Segmentation methods are so much efficient to segment complex tumor from challenging datasets. MACCAI BRATS 2013-2017 brain tumor dataset (FLAIR, T2) had been taken for high grade glioma (HGG). This data set is challenging to segment tumor due to ...

research-article
Bessel-Gauss Beam Light Sheet Assisted Fluorescence Imaging of Trabecular Meshwork in the Iridocorneal Region Using Long Working Distance Objectives

Glaucoma is one of the leading cause of blindness characterized by increased intra ocular pressure (IOP), visual field defects and irreversible loss of vision. Remedial intervention of glaucoma primarily aims at the reduction of IOP and subsequent ...

research-article
Semantic Segmentation of Colon Gland with Conditional Generative Adversarial Network

Semantic segmentation of colon gland is notoriously challenging due to their complex texture, huge variation, and the scarcity of training data with accurate annotations. It is even hard for experts, let alone computer-aided diagnosis systems. Recently, ...

research-article
Image Processing, Textural Feature Extraction and Transfer Learning based detection of Diabetic Retinopathy

Diabetic Retinopathy (DR) is one of the most common causes of blindness in adults. The need for automating the detection of DR arises from the deficiency of ophthalmologists in certain regions where screening is done, and this paper is aimed at ...

SESSION: Bioinformatics and Biosignal Analysis
research-article
Establishment of an Integrated Computational Workflow for Single Cell RNA-Seq Dataset

Single cell RNA-sequencing (scRNA-Seq) has emerged as a popular transcriptomic profiling approach to address long-standing questions on developmental biology and cancer biology. With the advent of increasing single-cell computational methods, it is not ...

research-article
An Interactive Gameplay to Crowdsource Multiple Sequence Alignment of Genome Sequences: Genenigma

Comparative genomics is a field of research that compares genomes of different organisms to identify common patterns. It is a powerful method used to identify the genetic diseases that cause mutations. Multiple Sequence Alignment (MSA) is an ...

research-article
A Hybrid Approach to Optimize the Number of Recombinations in Ancestral Recombination Graphs

Building ancestral recombination graphs (ARG) with minimum number of recombination events for large datasets is a challenging problem. We have proposed ARG4WG and REARG heuristic algorithm for constructing ARGs with thousands of whole genome sequences. ...

research-article
CNN-SVR for CRISPR-Cpf1 Guide RNA Activity Prediction with Data Augmentation

CRISPR from Prevotella and Francisella 1 (Cpf1), a RNA-guided DNA endonuclease that belongs to a novel class II CRISPR system, has recently become a popular tool for genome editing. How to improve the on-target efficiency and specificity of this system ...

research-article
Extraction of Respiration from PPG Signals Using Hilbert Vibration Decomposition

A new approach using the Hilbert vibration decomposition (HVD) for extracting the respiration from the photoplethysmographic (PPG) signal is proposed. It is suggested that the largest energy component of the PPG signal acquired using the HVD is ...

SESSION: Biological Systems Modeling and Simulation
research-article
Calcium Signaling and Finite Element Technique

In this paper, we describe the calcium signaling phenomena using finite element method in a typical neuron cell. Neuron being the fundamental cell of the brain has many important roles to perform. The approximated geometry of the neuron is considered to ...

research-article
A Fractional Mathematical Model to Study the Effect of Buffer on Calcium Distribution in Parkinson's Disease

Calcium (Ca2+) is a vital and very important cation for proper functioning of the nerve cells. There is abundant amount of Ca2+ in human nerve cells among them very few amount lies in the cytosol in the form of free Ca2+. These free amounts of Ca2+ ...

research-article
Computational Modelling of Calcium Buffering in a Star Shaped Astrocyte

Before last two decades, astrocytes were treated as supporting cells of neuron. Now it is regarded as important and strong participant in central nervous system. Astrocytes also play important role in many neuronal disorders like Alzheimer's, Parkinson'...

research-article
Stability of Mitotic Spindle Using Computational Mechanics

Fidelity of cell division depends on the ability of an internal cell structure called the mitotic spindle, to maintain the structural integrity of the cellular architecture despite being subject to high compressive loading. We propose a generic software ...

SESSION: Bioscience and Biotechnology
research-article
Research on Response Surface Optimization of Culture Medium for Antibacterial Substances Produced by Bacillus Amyloliquefaciens GN59

Single factor optimization experiment and response surface optimization experiment were designed to research the influence of different culture medium components to bacteriostatic active substances produced by bacillus amyloliquefaciens GN59 strain, and ...

research-article
Effected Brewing Time and Temperature of Centella Asiatica Tea on Antioxidant Activity and Consumer Acceptance

Centella asiatica has known as medical plant that used for treating bruises and reducing swelling. From the previous research lately, it reported that C.asiatica has properties to improve memory recognition and promote healthy skin. C.asiatica is herbal ...

research-article
β-Cyclodextrin Inclusion Complex with Dimethyl[4-hydroxypiperidin-4-yl]Phosphonates as Green Plant Growth Stimulators

Herein we report on the synthesis the synthesis of new dimethyl [1-(benzyl-, 2-phenylethyl-) -4-hydroxypiperidin-4-yl)]phosphonates obtained by reacting 1-(benzyl- or 2-phenylethyl-)piperidone-4 with dimethylphosphite in presence of sodium methylate in ...

research-article
Antimicrobial Activity of Lichens-Associated Actinomycetes Strain LC-23

Actinomycetes known as the largest antibiotic producer that has a broad range habitat. Research has been done to find a new antibiotic from the various habitats of actinomycetes. Lichens was the symbiotic structure of alga and fungi known as the ...

research-article
Comparative Studies Between Hydrothermal Carbonation and Torrefaction for Biofuel Production from Poultry Litter

The results of comparative experiments on the production of biofuel from poultry litter (PL) by the method of low-temperature pyrolysis (Torrefaction) and hydrothermal carbonization are presented. Comparison of the obtained results shows that as a ...

SESSION: Statistical Ecology
research-article
Ecological Informatics Approach to Analyze Habitat Preferences of Auricularia delicata (Italic) in Bingungan Forest, Turgo Natural Forest Conservation Area

Based on our previous research, Auricularia delicata has been detected as unique and important local mushroom in economic and ecological values which were newly recorded in Turgo tropical forest ecosystem, with exactly restricted distribution only in ...

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